YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15156194, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	127	0.64
Transmembrane Helix	128	151	0.82
Non-Cytoplasmic	152	156	0.34
Transmembrane Helix	157	174	0.70
Cytoplasmic	175	175	0.18
Transmembrane Helix	176	191	0.56
Non-Cytoplasmic	192	198	0.59
Transmembrane Helix	199	219	0.91
Cytoplasmic	220	226	0.64
Transmembrane Helix	227	249	0.84
Non-Cytoplasmic	250	255	0.58
Transmembrane Helix	256	275	0.85
Cytoplasmic	276	283	0.51
Transmembrane Helix	284	304	0.78
Non-Cytoplasmic	305	330	0.52
Transmembrane Helix	331	354	0.69
Cytoplasmic	355	371	0.44
Transmembrane Helix	372	395	0.76
Non-Cytoplasmic	396	400	0.32
Transmembrane Helix	401	421	0.87
Cytoplasmic	422	426	0.28
Transmembrane Helix	427	451	0.83
Non-Cytoplasmic	452	459	0.34
Transmembrane Helix	460	494	0.63
Cytoplasmic	495	604	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCWRARSYR LSPSLQPCLR RAKSIGLEPA PPRTASSPAA PDARPHGLKS GLLNLRPAFL  60
   61 LFIGGLLTTD PVKSRVALLA ADPPDNAKHR HSFLIYRTRL RPVRHSLRKN QMNRFQTYRR 120
  121 EWFSNIRGDV LSGIVVALAL IPEAIGFSVI AGVDPKVGLF ASFAIACVSA FTGGRPGMIS 180
  181 AATAATAVLM VTLVKEHGLQ YLFAATILMG VLQIAAGFAK LGRVMRFVSR SVMTGFVNAL 240
  241 AILIFMAQLP ELIGVPVETY VMIAAGLAII YLFPLVTKII PSPLVAIVAL TCVAVFSGMD 300
  301 IRTVGDLGEL PSTLPIFALP QVPLTFETLQ IIFPYSIALA AVGLLESLLT AQIVDDMTDT 360
  361 GSNKSQECIG QGTSNIASAL IGGMGGCAMI GQSVINVRSG GRGRLSTFVA GAFLLFLILV 420
  421 LDDLVRIIPM AALVAVMIMV SIGTFSWRSI LDLTRNPPSS SIVMLVTVGT VLATHDLAKG 480
  481 VLAGVLLSGV FFAGKVSKLF HVRPELSADG RERIYRVDGQ IFFASTESFI AAFDFAEEVE 540
  541 AVTIDVTQAH LWDISAVGAL DKVVLKFRKT GKRVEVIGVN EASAHMIDRF ALHDKPDAAA 600
  601 APLH