YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25288732, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRAYNIPN LLTYARILAV PVIVLCFFIE GKLESSDFAR WTALWLFIVA SLTDFLDGYL  60
   61 ARIWNQTSNI GRMLDPIADK LLVASVLLLM AADGTIAGWS LWAAITILCR EILVSGLREY 120
  121 LAALKVSVPV TQIAKWKTTI QMVAIAFLLA GPAGDKVLPY TTEMGITLLW LAAALTMYTG 180
  181 YDYFKAGLKH IVDEE

Type	Start	End	Confidence
Cytoplasmic	1	11	0.63
Transmembrane Helix	12	31	0.92
Non-Cytoplasmic	32	40	0.53
Transmembrane Helix	41	61	0.91
Cytoplasmic	62	80	0.54
Transmembrane Helix	81	97	0.81
Non-Cytoplasmic	98	98	0.20
Transmembrane Helix	99	114	0.55
Cytoplasmic	115	132	0.49
Transmembrane Helix	133	153	0.56
Non-Cytoplasmic	154	163	0.56
Transmembrane Helix	164	181	0.81
Cytoplasmic	182	195	0.71