YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15156089, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMETPISEP QQNGKQEGRS DSGRGPRLRE IPFRLLVPNL ITVLAICAGL SGVRLAIEGR  60
   61 FELAVGMVLL AAFLDGVDGR VARMMKATSK FGEQMDSLAD IVNFGVAPAL VVYIYLLDQA 120
  121 RSIGWIGALI YVIAAGLRLA RFNVMIERPV KAPWQSEFFV GVPAPMGAML VLLPVYLGFL 180
  181 GVEPDKPFAY VAAAYTVLIG YLLISRLPVW SGKSSTRIRR DLVLPMILVV VLYVAMLMSF 240
  241 TWEVLVLTVA AYLVFIPISA RLWHRRYGTL TIEEDAHDDA NGGNGLDRGI

Type	Start	End	Confidence
Cytoplasmic	1	34	0.95
Transmembrane Helix	35	55	0.93
Non-Cytoplasmic	56	62	0.68
Transmembrane Helix	63	82	0.88
Cytoplasmic	83	97	0.91
Transmembrane Helix	98	117	0.94
Non-Cytoplasmic	118	122	0.89
Transmembrane Helix	123	142	0.94
Cytoplasmic	143	157	0.91
Transmembrane Helix	158	180	0.92
Non-Cytoplasmic	181	187	0.89
Transmembrane Helix	188	210	0.89
Cytoplasmic	211	221	0.84
Transmembrane Helix	222	240	0.89
Non-Cytoplasmic	241	243	0.71
Transmembrane Helix	244	263	0.87
Cytoplasmic	264	290	0.88