YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25519247, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRFCIQQSF TRRLLRLSLM LRCICCPGKR SRETLFRSYS ASLTNSTGPV ELNHRNQEGI  60
   61 PMSKLLSGLS AVALGLSLAL GGVGSAAAQT KLLNVSYDPT RELYKDFNEA FAKKWKADTG 120
  121 EDLTIQQSHG GSGKQARSVI DGLEADVVTL ALQSDIDAIV QNSGKINKDW RTRLPHNSSP 180
  181 YTSTIVFLVR KGNPKGIHNW GDLVKGDIQI VTPNPKTSGG ARWNYLAAWA WANEEFKGDQ 240
  241 DKIKAYVGDL YKRAPVLDTG ARGSTVTFAQ RQIGDVLLAW ENEAYLAGQE FGADAFDIVV 300
  301 PPISILAEPP VAVVDANVDA KGTRKAAEAY LQYLYSDEGQ NIAAKHFYRP SNPAVVSKDL 360
  361 LKQLPDIKLV TIDDPIFGGW AKAQPEHFGD GGIFDQIYKP AK

Type	Start	End	Confidence
Cytoplasmic	1	64	0.62
Transmembrane Helix	65	87	0.59
Non-Cytoplasmic	88	402	0.99