YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17934683, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAKAGLIVN DVSHMKAAQR RVWFAAPLVL LALAILLGLG TWQVKRLYWK EALMADIEER  60
   61 RNASPATLSD IEAIVKSGGE IEYRKVRLSG TFDHTRERHF FATHQGQTGY YIYTPLTLAD 120
  121 GRILFVNRGF VPFEMKEAAK RPDGQVSGEV TITGLARAPL VAKPSSLLPD NDIAKNIFYW 180
  181 KDLAAMASSA EVPPERLVKL FVDADNAPNP GGWPQGGVTL IDLPNNHLQY AITWYGLAAA 240
  241 LVIVAGFAYF RNGKAQGE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.79
Transmembrane Helix	21	42	0.86
Non-Cytoplasmic	43	230	0.80
Transmembrane Helix	231	250	0.93
Cytoplasmic	251	258	0.67