YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15887910, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDQDKDSK TEDPTEKKLR DAAEKGNLPF SREVPIFASS LAFYCYLVFF LPEGAGRLGV  60
   61 TLKDLFGQPE QWNLSTRPDA LALLYFLGTS VAYLLMPAMI MFIVFGLASS FLQNLPSPVL 120
  121 ERVRPQWSRI SPAKGFTRIY SKQGFVEFAK SVFKIMIVSI IMFFALRGDF YSLIDLMFSD 180
  181 PQVIFVRVVE IVKKMMVVIL LSTALLAAVD VLWTRHHWFS QLKMTKHEVK EEYKQSQGDP 240
  241 VVKSRQRSIA RDRARRRMIN NVPRATLVIA NPTHFAVALR YVREEGDAPV VVAKGQDLIA 300
  301 LKIRQIAEEN NIPVFEDPPL ARSMFAQVSV DSVIPPVFYK AVAELVHRVY ARTSSKIRVQ 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	33	0.89
Transmembrane Helix	34	52	0.80
Non-Cytoplasmic	53	81	0.79
Transmembrane Helix	82	112	0.74
Cytoplasmic	113	150	0.84
Transmembrane Helix	151	171	0.86
Non-Cytoplasmic	172	194	0.76
Transmembrane Helix	195	214	0.94
Cytoplasmic	215	360	0.79