YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15887575, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVAAIFLIL PLCLCFAALN DLFSMTIPNV ITVVLLLSFA FIAPFAGMDF QTFGLSLAGG  60
   61 LIVFLGCFAL FAANVMGGGD AKLLTGAAVW YGFNISLVEF LLAVTLVGGA LTVGILLLRS 120
  121 RSQEIMAFGI PIPDSLMVAQ KIPYGIGIAI AGLLTYGEAP LVKAAIASIL

Type	Start	End	Confidence
Cytoplasmic	1	4	0.47
Transmembrane Helix	5	23	0.57
Non-Cytoplasmic	24	29	0.54
Transmembrane Helix	30	48	0.89
Cytoplasmic	49	54	0.58
Transmembrane Helix	55	76	0.90
Non-Cytoplasmic	77	94	0.71
Transmembrane Helix	95	118	0.89
Cytoplasmic	119	141	0.70
Transmembrane Helix	142	159	0.66
Non-Cytoplasmic	160	170	0.49