YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15887569, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPTIVLLAV LVAISAGALA YAFLFQQIEV EKKTTSRFKR VQAAETDHTN IKAARDRVQE  60
   61 LSKRRKSMQD SLRDMEKKQN EKAKKAKNVS LRDKLVQAGL TISVRQFHLL SAGAAACAAF 120
  121 ISLIYGLSLL TALPIAVVAA LGLPRWVLAF LLKRRQKKFL EEFPNALDVM CRSIKSGLPL 180
  181 NDAVRLIASD GQEPVKTEFQ RVVDAQQVGI GIPQGIERMM LTMPLFEVSF FSIVINIQAQ 240
  241 AGGNLSEALS NLSRVLRDRR KMRAKVNALS MEAKASAVII GALPFIVMLL VHFTSPDYLS 300
  301 ILFTDTRGHL ILGASAIWML IGIFIMRQMI NFDI

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.66
Transmembrane Helix	5	25	0.65
Cytoplasmic	26	106	0.66
Transmembrane Helix	107	125	0.78
Non-Cytoplasmic	126	129	0.56
Transmembrane Helix	130	149	0.87
Cytoplasmic	150	272	0.91
Transmembrane Helix	273	293	0.90
Non-Cytoplasmic	294	307	0.78
Transmembrane Helix	308	327	0.93
Cytoplasmic	328	334	0.71