YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17934133, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGDLFSRLT DPQTIIAILV TLAVFATLYT LIMPFLERKD LAKRMKAVSS ERELIRSRER  60
   61 ERLATVTRDG RTSLRGNNNK SARRIVEKFN LREALADQNT MNKLRAAGFR SQNALNTFLA 120
  121 ARFVLPFIFL AVAFTWVFVL GNLADKAFVV RLMAVLVFGY IGFYAPNIYV SNRMTKRQAS 180
  181 IKRAWPDALD LMLICIESGV SMESAMRRVA EEMGEQSPEL AEEMILTTAE LSFLQDRRTA 240
  241 LENFGMRTQL DGVKSVVQAL IQAERYGTPL AQALRVLAQE GRDERMNEAE KKAAALPPKL 300
  301 TVPMIIFFLP VLIAVILGPA GIRVADTF

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.93
Transmembrane Helix	15	36	0.95
Cytoplasmic	37	117	0.99
Transmembrane Helix	118	140	0.92
Non-Cytoplasmic	141	146	0.92
Transmembrane Helix	147	170	0.89
Cytoplasmic	171	299	0.98
Transmembrane Helix	300	322	0.90
Non-Cytoplasmic	323	328	0.84