YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25349738
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPGAIYGVI CWRKRMRAER GPPKQTISLP VALRKDRDMS EIAPQNRRIR PAAIVVLFLT  60
   61 IALTGCLLAL GTWQVQRLFW KLDLIERVDV RAHAEPVDAP AASDWPALGN PSDYEYRRVK 120
  121 LTGTLLNDRE VQVYTVTDLG PGYWVMTPLR RDDGSSIIVN RGFVPSDRRD PSSRTGGEPT 180
  181 GNVEIVGLMR APETGGLFLR TNDPANGRWY SRNIPQITQA SGLSDVAPFY VDADATPNPG 240
  241 GLPVGGKTML TFPNNHLSYA VTWYILAAMV VAAGWYVLRN LNAPKSKRDA D

Type	Start	End	Confidence
Cytoplasmic	1	51	0.97
Transmembrane Helix	52	73	0.93
Non-Cytoplasmic	74	258	0.98
Transmembrane Helix	259	278	0.95
Cytoplasmic	279	291	0.93