YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|165993195, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINFWIFGLF CLIGISSTHP NAPPVFVKLG ESVNMSCIYQ SQMARHFSWY KHEPGQNPML  60
   61 ISTIYKYDHT AQFFNTFGND SRFSVLNENG VHLLTIRNVQ FSDSATYYCG GAYSNVMEVV 120
  121 KGTRLIVQGL EKHTVVKQHD LIPPHSGDSV SLTCTVLNQK CVGNHSMYWL IIESQDYRPR 180
  181 IISTHGTPVD QCEWISDGDF RALRCVYSFS RKDFRLSNSA TYSCTVTACG EKLDRNGSKL 240
  241 DIDADSTEEM MILVLLSIAR TCLLLLVIVM VIIWYCVYSK RISKNVHYPS DVAFRNRQSP 300
  301 KKRRPGLMIN SVSNQQ

Type	Start	End	Confidence
Signal Peptide	1	20	0.92
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	255	0.98
Transmembrane Helix	256	278	0.90
Cytoplasmic	279	316	0.97