YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33113255
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	120	0.97
Transmembrane Helix	121	140	0.93
Non-Cytoplasmic	141	163	0.88
Transmembrane Helix	164	183	0.94
Cytoplasmic	184	196	0.73
Transmembrane Helix	197	218	0.89
Non-Cytoplasmic	219	225	0.82
Transmembrane Helix	226	245	0.94
Cytoplasmic	246	283	0.93
Transmembrane Helix	284	302	0.65
Non-Cytoplasmic	303	368	0.57
Transmembrane Helix	369	389	0.79
Cytoplasmic	390	438	0.90
Transmembrane Helix	439	460	0.90
Non-Cytoplasmic	461	467	0.82
Transmembrane Helix	468	488	0.91
Cytoplasmic	489	499	0.79
Transmembrane Helix	500	522	0.93
Non-Cytoplasmic	523	540	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVESKRKE NGGSGPVTPD IGGTSLLKRE SKVAKSLWLR QQDTITRLEE LQRQHEEEIR  60
   61 AKERRQNSYD DLRTPLRSVD GSRRPSVVND INDYRGRPLH DQLHGAYRAT LLSHHTKNLN 120
  121 LRGFLNLFFI LLFVINFRMA TDNLMEYGLM IRLPSSFRDI LSNWPMLLCF LLMHFCILGA 180
  181 FVIERFVAAW VPHLLDWSEC VLIGLNFFLV FIVPYLTVCN SSPSPAASAL LLAFSIVWLF 240
  241 KLFSFHHVCL DARRALRDGD NFRELCSNSE EAEHVRRYPY SITLRHLYTF IWMPTMCFQF 300
  301 YYPRVPRIRW LSVIRHVFES AACLALMKIV VDQHIVPVAR NSFTITEMQS IPLSTLLVHF 360
  361 LDKITRLSIP NLYVWLLMFV GLFHHWCNIL AEVTRFGDRQ FYLDWWNASS FGEYWRKWNL 420
  421 PIHHFLNRHI NKPLRRARFP RIVATSVVFL ISALLHEYMI TVPLQLGWTG WVFLGFMAQA 480
  481 PLTYITNLSF FQRNPTVGNC FFWFIFCFSG QPLGILIYWY LWGVKHGTVQ QLDPSKIQIM 540
  541