YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55243510, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMCVCCVAR DVAVRAVLDA VGTCAAVRIG FSSAWCWART HTLRNGVTFG PVTVWWNSVQ  60
   61 TSFAEVNRAS QAGPECEAKN KERKEGDRDQ AHSLLSRARV FVFLCATDCE KRYAKTPPSK 120
  121 PMERERRRTD GKAFALLAGA VLVLLTCVQL AASCNEMVCA SIVSKCMLTQ SCKCDMKSCT 180
  181 CCKECAECLS YLYTECCSCL EMCPKPNETS NELSKQSHIE DLEGFPNLYD VITSEQDAQG 240
  241 RWKVISFPID IDAALYGPKG DGATKYVVHS TDMDLKQKYE DPNKITVNCT VAYQAQCMSW 300
  301 NKCKESCRTM GASSYRWFHD GCCECIGQYC LNYGINESRC RDCPENKEHD LDDFAPEDEL 360
  361 DYGDGLGPLD NAAIESTNI

Type	Start	End	Confidence
Cytoplasmic	1	132	0.75
Transmembrane Helix	133	152	0.77
Non-Cytoplasmic	153	379	0.98