YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54873456
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRVPHSTF LFLGPQKRLA EGSRISPQNF ICSGRYLLKL ESGPHKRSEQ KNCLVYSRKN  60
   61 KIVKAVAVSV PSSPADNAED RKQLSENYGF RQIGEPLPDN VTLKDIVDTL PRKVFEIDDV 120
  121 KAGKSVLTSV TSYALGIFMI AKAPWYLLPL AWAFTGTAIT GFFVIGHDCA HKSFSRNKLV 180
  181 EDIVGTLAFL PLIYPYEPWR FKHDRHHAKT NMLSEDTAWH PVWLEEFESS PILRKAIIYG 240
  241 YGPFRPLMSI AHWLMWHFDL KKFRSNEVKR VKISLACVSA FIAIGWPLII LKTGIMGWIK 300
  301 FWLMPWLGYH FWMSTFTMIH HTAPHIPFKS SDEWNAAQAQ LNGTVHCDYP HWIEILCHDI 360
  361 NVHIPHHISS RIPSYNLRAA HKSLQENWGK YMNEATWNWR LMKTILTICH VYDKEQNYVA 420
  421 FDELAPKDSQ PITFLKKVMP DYA

Type	Start	End	Confidence
Cytoplasmic	1	121	0.93
Transmembrane Helix	122	141	0.67
Non-Cytoplasmic	142	147	0.55
Transmembrane Helix	148	169	0.84
Cytoplasmic	170	270	0.53
Transmembrane Helix	271	291	0.91
Non-Cytoplasmic	292	301	0.66
Transmembrane Helix	302	323	0.80
Cytoplasmic	324	443	0.92