YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46237697, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVWSLSLP SCLLSLLLLL QLSCSYAGQF RVIGPGHPIR ALVGDEAELP CRISPGKNAT  60
   61 GMEVGWYRSP FSRVVHLYRN GKDQDAEQAP EYRGRTELLK ESIGEGKVAL RIQNVRFSDE 120
  121 GGYTCFFRDH SYQEEAAVEL KVEDPFYWIN PGVLALIALV PMLLLQVSVG LVFLFLQHRL 180
  181 RGKLRAEVEN LHRTFDPHFL RVPCWKITLF VIVPVLGPLV ALIICYNWLH RRLAGQFLEE 240
  241 LRNPF

Type	Start	End	Confidence
Signal Peptide	1	27	0.98
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	152	0.99
Transmembrane Helix	153	176	0.93
Cytoplasmic	177	206	0.94
Transmembrane Helix	207	230	0.88
Non-Cytoplasmic	231	245	0.98