YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46237581, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTGTVARAW VLVLALWGAV AGGQNITARI GEPLMLSCKG APKKPTQKLE WKLNTGRTEA  60
   61 WKVLSPQGDP WDSVARILPN GSLLLPAIGI VDEGTFRCRA TNRLGKEVKS NYRVRVYQIP 120
  121 GKPEIVNPAS ELTANVPNKV GTCVSEGSYP AGTLSWHLDG KPLIPDGKGT VVKEETRRHP 180
  181 ETGLFTLRSE LTVTPAQGGT TPTYSCSFSL GLPRHRPLNT APIQPRVREP LPPEGIQLLV 240
  241 EPEGGTVAPG GTVTLTCAIS AQPPPQIHWI KDGTPLPLAP SPVLLLPEVG HEDEGIYSCV 300
  301 ATHPSHGPQE SPPVNIRVTE TGDEGQAAGS VDGSGLGTLA LALGILGGLG IAALLIGAIL 360
  361 WRKRQPRLEE RKAPESQEDE EERAELNQSE EAEMPENGAG GP

Type	Start	End	Confidence
Signal Peptide	1	23	0.96
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	338	0.99
Transmembrane Helix	339	361	0.94
Cytoplasmic	362	402	0.99