YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50086535, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	41	0.95
Non-Cytoplasmic	42	49	0.83
Transmembrane Helix	50	69	0.94
Cytoplasmic	70	80	0.82
Transmembrane Helix	81	101	0.94
Non-Cytoplasmic	102	109	0.74
Transmembrane Helix	110	131	0.93
Cytoplasmic	132	138	0.82
Transmembrane Helix	139	163	0.86
Non-Cytoplasmic	164	170	0.85
Transmembrane Helix	171	192	0.89
Cytoplasmic	193	205	0.76
Transmembrane Helix	206	225	0.94
Non-Cytoplasmic	226	234	0.64
Transmembrane Helix	235	255	0.94
Cytoplasmic	256	272	0.81
Transmembrane Helix	273	291	0.89
Non-Cytoplasmic	292	298	0.59
Transmembrane Helix	299	318	0.82
Cytoplasmic	319	333	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIVKIKMER GRMMALLRFT AFVQKTFALW VVVFAALAFW MPDVFVWLKA YIPWMLGIIM  60
   61 LGMGMTMSLQ DFQGILRYPK AVLIGVVAQF VVMPGLAFLL CQLFQLPSEI AIGVILVGCC 120
  121 PGGTASNVIT YMARGNIALS VACTSVSTLL APLLTPAIFY LLASQWIQID AMSMFVSILQ 180
  181 VILFPILIGL LLRRFFARQV NRYIEVMPLI SVFAIVAIVA AIIGASKAAI LQSGALILAV 240
  241 VMLHNGLGFL IGYWASRWLR LSDYDSKAIA IEVGMQNSGL GVALAAVHFA ASPITAVPSA 300
  301 IFSLWHNISG AMLATYWARQ SKQKTQQEPR DNF