YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49531644, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEPSHRENG EMSLITHNSE LAEKLQSRDA TREPTWVRYL LLTIALLFFL SCLILPLVLV  60
   61 FVEAFRQGID VYINALTNSD TLSAVKLTLL TAVIAVPLNV VFGVAAAWAV AKFQFRGKSF 120
  121 LTTLIDLPFS VSPVIAGLML VLIFGMQGWF GPWLMDHDIK ILYAVPAIVI ATIFITVPFV 180
  181 ARELIPLMEA QGIEEEEAAI VLGASGWQTF WKVTLPNIKW GLIYGVILCN ARAMGEFGAV 240
  241 SVVSGHIRGE TNTLPLHVEI LYNEYTFSAA FAVSSLLALL AIVTLILKTW VEARQEKQNK 300
  301 HQNSTTS

Type	Start	End	Confidence
Cytoplasmic	1	38	0.96
Transmembrane Helix	39	60	0.93
Non-Cytoplasmic	61	87	0.90
Transmembrane Helix	88	111	0.90
Cytoplasmic	112	123	0.86
Transmembrane Helix	124	146	0.86
Non-Cytoplasmic	147	160	0.80
Transmembrane Helix	161	181	0.94
Cytoplasmic	182	219	0.92
Transmembrane Helix	220	240	0.79
Non-Cytoplasmic	241	266	0.86
Transmembrane Helix	267	290	0.89
Cytoplasmic	291	307	0.96