YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50084364, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYSHHAEDH YIHRTGWLRA SVLGANDGII SVTSLVMGMA ASGASSHTLF IACLAGLISG  60
   61 ATSMAAGEYV SVQSQKDIEH ADLKFEAREL EKNPHLELDE LTIIYIRRGL APELAREVAI 120
  121 QLTEKDALEA HARDEIGILE QTAARPIQAA LSSALSFSLG ALCPMLAILF SPESSVSTVV 180
  181 LTVGIISLAC MGALSSYFAG TSLWKGSLRI TVWGIIAMLF SSWIGSFFNV TPL

Type	Start	End	Confidence
Cytoplasmic	1	19	0.85
Transmembrane Helix	20	41	0.85
Non-Cytoplasmic	42	47	0.69
Transmembrane Helix	48	67	0.91
Cytoplasmic	68	148	0.95
Transmembrane Helix	149	170	0.92
Non-Cytoplasmic	171	177	0.80
Transmembrane Helix	178	199	0.94
Cytoplasmic	200	209	0.77
Transmembrane Helix	210	228	0.95
Non-Cytoplasmic	229	233	0.73