YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55250855, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSRELFVSA PGKVILHGEH SVVHGKVALA VSVNLRTYLR LQSTSSGQVC INLPNIDTFL  60
   61 SWEITALQPL LAGSKAEQRD PKELDADLLK KLREFTGISD DSTDTRSMAV LAFLYMYLTV 120
  121 FAESLASITV SVWSELPTGA GLGSSAAYNV CLSAALLSAR GNISPLLMAQ QESARWSKDE 180
  181 MELINRWAFM GEKIIHGNPS GVDNAVGTWG GFLRYHSGNI TPLSWVPILR ILLTNTKVPR 240
  241 STKVLVSGVK DKINKFPSVM RPVLESVSAV SCTCEQTLTE MAEHGPSAEH YNILEELIDI 300
  301 NQHHLNVMGV GHSSLDTLCR VTLSKGLHSK LTGAGGGGCG ITLLRPETDT SVIQSAVEEL 360
  361 KACGFDCWET SIGAPGVQQH SSAAISPDVL KILNSY

Type	Start	End	Confidence
Cytoplasmic	1	110	0.77
Transmembrane Helix	111	132	0.70
Non-Cytoplasmic	133	144	0.68
Transmembrane Helix	145	159	0.65
Cytoplasmic	160	396	0.64