YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRLS1_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.44
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAWRVARGA WGSLRVAVRP PGARLGRGGS RRALLPPAAC CLGCLAERWR LRPAAFALRL  60
   61 PGTSPRTHCS GAGKAAPEPA AGGDAAAQAP SARWVRASAT SSYENPWTIP NLLSMTRIGL 120
  121 APVLGYLILE EDFNVALGVF ALAGLTDLLD GFIARNWANQ KSALGSALDP LADKVLISIL 180
  181 YISLTYADLI PVPLTYMIIS RDVMLIAAVF YVRYRTLPTP RTLAKYFNPC YATARLKPTF 240
  241 ISKVNTAVQL ILVAASLAAP VFNYADSIYL QILWCCTAFT TAASAYSYYH YGRKTVQVIK 300
  301 GK

Type	Start	End	Confidence
Signal Peptide	1	46	0.49
N-region	1	37
H-region	38	43
C-region	44	46
Cleavage Site	46	47
Non-Cytoplasmic	47	193	0.51
Transmembrane Helix	194	214	0.60
Cytoplasmic	215	243	0.81
Transmembrane Helix	244	262	0.85
Non-Cytoplasmic	263	269	0.76
Transmembrane Helix	270	290	0.89
Cytoplasmic	291	302	0.87