YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55250716
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDLEKGAAT HGAGCFAKIK VFLMALTCAY VSKSLSGTFM SSMLTQIERQ FGIPTAIVGF  60
   61 INGSFEIGVY NLPAICIGYL IAGFMMKKFK ITVKTAAFLA FCLSLSEYSF GFCNFLITCD 120
  121 NVPVAGLTNS YERDQKPLYL ENNVLADCNT RCSCLTKTWD PVCGDNGLAY MSACLAGCEK 180
  181 SVGTGTNMVF HNCSCIQSPG NSSAVLGLCN KGPECTNKLQ YLLILSGFLS ILYSFAAIPG 240
  241 YMVFLRCIKS EEKSLGIGIH AFCIRVFAGI PAPIYFGALI DRTCLHWGTQ KCGAPGACRM 300
  301 YDINSFRRIY LGMSAALRGS SYLPAFVIVI LTRKFSLPGK INSSEMEIAE MKLTEKESQC 360
  361 TDVHRNPKFK NDGELKTKL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.81
Transmembrane Helix	21	40	0.80
Non-Cytoplasmic	41	66	0.74
Transmembrane Helix	67	85	0.86
Cytoplasmic	86	95	0.77
Transmembrane Helix	96	118	0.80
Non-Cytoplasmic	119	221	0.92
Transmembrane Helix	222	245	0.87
Cytoplasmic	246	255	0.83
Transmembrane Helix	256	279	0.85
Non-Cytoplasmic	280	309	0.89
Transmembrane Helix	310	332	0.78
Cytoplasmic	333	379	0.86