YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55250561, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNSTTATEV SAPTDYDYSS ASYDDDNPNA APCSLRETWN FLGRFAPVAY IMVFILALVG  60
   61 NILVLCVIRR YRQSRHSPCS FSLTDTFLLH LAVSDLLLAA TLPFFAVEWI SEWVFGKVMC 120
  121 KITGALFSLN VYCGVLFLAC ISFDRYLAIV HAINISWRRK TCHAQLACAF IWVICLGLSM 180
  181 VDMHFRDLVQ IPGMNRMVCQ IVYSEQYSKQ WQIGMQLVSM VLGFILPLLV MLYCYLHIFK 240
  241 ALCHATRRQK RRSLRLIISL VIVFVISWAP YNALRMTDSL QMLGVIVKSC ALNNVLDVGI 300
  301 LVTESLGLAH CALNPLLYGL VGVKFRRELA QMCKAALGPQ GCLGLVGWAN GRGSSTRRPT 360
  361 GSFSSVETEN TSYFSVMA

Type	Start	End	Confidence
Non-Cytoplasmic	1	47	0.97
Transmembrane Helix	48	68	0.95
Cytoplasmic	69	86	0.89
Transmembrane Helix	87	107	0.93
Non-Cytoplasmic	108	121	0.88
Transmembrane Helix	122	143	0.87
Cytoplasmic	144	161	0.84
Transmembrane Helix	162	185	0.87
Non-Cytoplasmic	186	216	0.94
Transmembrane Helix	217	236	0.94
Cytoplasmic	237	253	0.85
Transmembrane Helix	254	274	0.91
Non-Cytoplasmic	275	305	0.87
Transmembrane Helix	306	322	0.77
Cytoplasmic	323	378	0.63