YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55250404
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	344	0.99
Transmembrane Helix	345	367	0.92
Cytoplasmic	368	379	0.85
Transmembrane Helix	380	401	0.82
Non-Cytoplasmic	402	431	0.83
Transmembrane Helix	432	453	0.92
Cytoplasmic	454	462	0.77
Transmembrane Helix	463	483	0.88
Non-Cytoplasmic	484	505	0.94
Transmembrane Helix	506	527	0.89
Cytoplasmic	528	542	0.90
Transmembrane Helix	543	563	0.92
Non-Cytoplasmic	564	600	0.94
Transmembrane Helix	601	619	0.94
Cytoplasmic	620	639	0.84
Transmembrane Helix	640	663	0.88
Non-Cytoplasmic	664	670	0.81
Transmembrane Helix	671	690	0.68
Cytoplasmic	691	699	0.63
Transmembrane Helix	700	719	0.74
Non-Cytoplasmic	720	725	0.65
Transmembrane Helix	726	749	0.85
Cytoplasmic	750	769	0.91
Transmembrane Helix	770	789	0.92
Non-Cytoplasmic	790	794	0.76
Transmembrane Helix	795	813	0.86
Cytoplasmic	814	850	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDQRNQELQ WVEAAHWIGL EENLREDGVW GRPHLSYLTF WSLLELQKVF SKGTFLLDLA  60
   61 ETSLAGVANK LLDSFIYEDQ IRPQDRDELL RALLLKRSHA EDLKDLEGVK PAVLTRSGAP 120
  121 SEPLLPHQPS LETKLYCAQA EGGSEEPSPS GILKIPPNSE TTLVLVGRAS FLVKPVLGFV 180
  181 RLKEAVPLED LVLPEPVSFL LVLLGPEAPH IDYTQLGRAA ATLMTERVFR VTASLAQSRG 240
  241 ELLSSLDSFL DCSLVLPPTE APSEKALLNL VPVQKELLRK RYLPRPAKPD PNLYEALADG 300
  301 GKEGPGDEDD PLRRTGRIFG GLIRDIRRRY PYYLSDITDA LSPQVLAAVI FIYFAALSPA 360
  361 VTFGGLLGEK TRNLMGVSEL LISTAVQGIL FALLGAQPLL VLGFSGPLLV FEEAFYSFCE 420
  421 SNNLEYIVGR AWIGFWLILL VVLVVAFEGS FLVQYISRYT QEIFSFLISL IFIYETFSKL 480
  481 IKIFQDYPLQ ESYAPVVMKP KPQGPVPNTA LLSLVLMVGT FLLAMMLRKF KNSTYFPGKL 540
  541 RRVIGDFGVP ISILIMVLVD TFIKNTYTQK LSVPDGLKVS NSSARGWVIH PLGLYNHFPK 600
  601 WMMFASVLPA LLVFILIFLE SQITTLIVSK PERKMIKGSG FHLDLLLVVG MGGVAALFGM 660
  661 PWLSATTVRS VTHANALTVM GKASGPGAAA QIQEVKEQRI SGLLVSVLVG LSILMEPILS 720
  721 RIPLAVLFGI FLYMGITSLS GIQLFDRILL LFKPPKYHPD VPFVKRVKTW RMHLFTGIQI 780
  781 ICLAVLWVVK STPASLALPF VLILTVPLRR LLLPLIFREL ELQCLDGDDA KVTFDEAEGL 840
  841 DEYDEVPMPV