YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55250359, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.87
Transmembrane Helix	50	69	0.77
Non-Cytoplasmic	70	80	0.62
Transmembrane Helix	81	103	0.85
Cytoplasmic	104	122	0.61
Transmembrane Helix	123	148	0.84
Non-Cytoplasmic	149	208	0.63
Transmembrane Helix	209	229	0.89
Cytoplasmic	230	237	0.44
Transmembrane Helix	238	260	0.81
Non-Cytoplasmic	261	290	0.51
Transmembrane Helix	291	311	0.85
Cytoplasmic	312	319	0.49
Transmembrane Helix	320	345	0.84
Non-Cytoplasmic	346	378	0.54
Transmembrane Helix	379	400	0.81
Cytoplasmic	401	420	0.88
Transmembrane Helix	421	443	0.90
Non-Cytoplasmic	444	452	0.83
Transmembrane Helix	453	476	0.91
Cytoplasmic	477	492	0.96
Transmembrane Helix	493	516	0.89
Non-Cytoplasmic	517	534	0.89
Transmembrane Helix	535	557	0.92
Cytoplasmic	558	600	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATNGTKASD GHVLTEVNEA PTANDKPKTL VVKVQKKKEL PDRETWQGKF DFLLSCVGYA  60
   61 IGLGNVWRFP YLCGKNGGGA FLIPYFLTLI FAGVPLFFLE TALGQYTSIG GLGVWKLAPM 120
  121 FKGVGLAAAV LSFWLNIYYI VIIAWAIYYL YNSFTTDLPW KSCDNPWNTD KCFSNYSMAN 180
  181 IGNMTSAVVE FWERNMHQLT DGLEKPGEIR LPLAITLAIA WVLVYFCIWK GVGWTGKVVY 240
  241 FSATYPYFML FILFIRGVTL PGAKEGILFY VTPEFSKLKE SEVWLDAATQ IFFSYGLGLG 300
  301 SLIALGSYNP FNNNVYKDSI IVCCINSFTS MFAGFVIFSI VGFMAHITKR PIADVAASGP 360
  361 GLAFLAYPEA VTQLPISPLW AVLFFSMLLM LGIDSQFCTV EGFITALVDE FPRALRGRRE 420
  421 IFIAVVCLVS YLIGLSNITQ GGLYVFKLFD YYSASGMCLL FLVFFECVSI SWFYGVNKFY 480
  481 GNLEEMIGYK PCIWWKLCWV VFTPLIVAGV FLFSAVQMVP LTLNNYVFPK WGQGVGWCMA 540
  541 LSSMVLIPGY MGYMFLTLKG SYKERLRIMI QPTAAAVRTQ ENGPEQQPEN PTPANDEAYI 600
  601