YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|182891066, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.67
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELHIIILSL VFVLSTGTEF EHEAIQFQVC SNTEQEFFIG YDGEEIWHAD FAQKRGVDTS  60
   61 PKFADDVTFP GFYERAIQYI SGCKSNLLVF IKSFKNPPPE MDAPQTSIYS KGYVQLGVQN 120
  121 TLVCHVTSFY PPFVNISWTK NNVIVTEGMR LSLYHPRLDG TFNIFSTLTF MPAEGDIYSC 180
  181 TVDHEALQGQ PQAKLWDVDV VLPSVGPSVF CGVGLTLGLL GLAIGTFFIV KGKNCH

Type	Start	End	Confidence
Signal Peptide	1	18	0.72
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	208	0.89
Transmembrane Helix	209	230	0.85
Cytoplasmic	231	236	0.80