YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34785313
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAWAAVVEVE VGGGAAGERE LDEVDMSDLS PEEQWRVEHA RMHAKHRGHE AMHAEMVLIL  60
   61 IATLVVAQLL LVQWKQRHPR SYNMVTLFQM WVVPLYFTVK LHWWRFLVIW ILFSAVTAFV 120
  121 TFRATRKPLV QTTPRLVYKW FLLIYKISYA TGIVGYMAVM FTLFGLNLLF KIKPEDAMDF 180
  181 GISLLFYGLY YGVLERDFAE MCADYMASTI GFYSESGMPT KHLSDSVCAV CGQQIFVDVS 240
  241 EEGIIENTYR LSCNHVFHEF CIRGWCIVGK KQTCPYCKEK VDLKRMFSNP WERPHVMYGQ 300
  301 LLDWLRYLVA WQPVIIGVVQ GINYILGLE

Type	Start	End	Confidence
Cytoplasmic	1	50	0.81
Transmembrane Helix	51	72	0.91
Non-Cytoplasmic	73	100	0.68
Transmembrane Helix	101	124	0.85
Cytoplasmic	125	141	0.77
Transmembrane Helix	142	165	0.86
Non-Cytoplasmic	166	176	0.71
Transmembrane Helix	177	194	0.47
Cytoplasmic	195	306	0.62
Transmembrane Helix	307	326	0.59
Non-Cytoplasmic	327	329	0.56