YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55249643, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSMFREYQS NAVIMAHYNF TGKLKENKYR DGLKPEAIAF LIICLLIVVE NAIVLVAIWK  60
   61 NKKFHMPMYY LLGSLTLSDL LAGFTYMVNI VTSGANTLKM TPVLWFLREG GVFITLAASV 120
  121 ISLLAIAIER HVTMVRMKPY QGAKRGRMFG LIGASWLLSI LLGILPIMGW NCIGNLDECS 180
  181 TVLPLYAKSF ILFCITVFTL VLMSIVVLYV RIFRIVKSNT QRLGFGTQRK GLARKSQKYL 240
  241 ALLKTVTIVL GVFIACWLPL FVLLLLDFSC PAQSCEVLFK ADYFLGIAMI NSLLNPIIYT 300
  301 LTSKDMRRAI LRLVCSYCLL TKDGQVKKFG MPFLDCSTSR AEVPSHRLEG LETTVSSGNF 360
  361 TPSTIKAIYP RILKS

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.93
Transmembrane Helix	37	59	0.92
Cytoplasmic	60	67	0.89
Transmembrane Helix	68	88	0.90
Non-Cytoplasmic	89	109	0.80
Transmembrane Helix	110	128	0.96
Cytoplasmic	129	147	0.91
Transmembrane Helix	148	170	0.91
Non-Cytoplasmic	171	188	0.92
Transmembrane Helix	189	213	0.90
Cytoplasmic	214	239	0.99
Transmembrane Helix	240	263	0.90
Non-Cytoplasmic	264	282	0.86
Transmembrane Helix	283	302	0.92
Cytoplasmic	303	375	0.96