YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55249624, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEWGFLSKL LDKVQSHSTV VGKVWLTVLF VFRIMVLGAG AEKVWSDEQS KMICNTKQPG  60
   61 CTNVCYDHTF PISHIRFWVL QIIFVSTPTL LYFGHVLHVL HKEKKLRHEI ESHAEKQGLK 120
  121 QPKYIDDYGK VIIKGQLLGS YLASLFVKIL LEAAFIVGQY YIYGFIMIPK IECSQSPCPH 180
  181 TVECYMSRPT EKTIFIIFML VVACISLLLN VVEMFYLICR RSKRHRAAKM TSFHKGLNGS 240
  241 KVYISGTSKS SKS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	40	0.92
Non-Cytoplasmic	41	76	0.96
Transmembrane Helix	77	99	0.91
Cytoplasmic	100	137	0.97
Transmembrane Helix	138	162	0.81
Non-Cytoplasmic	163	194	0.95
Transmembrane Helix	195	219	0.93
Cytoplasmic	220	253	0.99