YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54310623, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFRKSFAS LGIGAAKVDT VLKHDVLIPG ENLPVVIHVQ GGATEQQIDN INVQLCCRYI  60
   61 DEVPVSRGDS EHRKEKRPQT CVLATWSLPE SFVIGVNEAR EFDVNLELPF NTPVTIGDAK 120
  121 VWLETYLDIP LARDPKDTDT LTVRPEPLMD GVFTALENAG LRILQVECEA ASGFDLPFVQ 180
  181 EFEFVPVSGP YHGLWRELEV VAYRDSDGLQ LWFELDRRLK GISGMLSGFL GRGELKRHCH 240
  241 ISAQCTPTEA GQQVLDYLDQ TT

Type	Start	End	Confidence
Signal Peptide	1	20	0.56
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	262	0.99