YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54310428, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWNEPGNND GRDKDPWGNK NRGGRDQGPP DLDEVFSKLS RKLGGIFGNG NKKGPSTGSS  60
   61 AISLGVVAVL ATAVWGFSGF YTIGEAERGV VLRFGKFYEM VDPGLNWKPT FVDEVTPVNV 120
  121 QAIRSLRSSG LMLTKDENVL KVEMDVQYRV SDAQSYLFSV TNADDSLRQA TDSALRAVIG 180
  181 DSSMDEALTT GRQVIRASTQ EAIEKIIENY YMGVLVVDVN FQSARPPTEV QDAFDDAIAA 240
  241 REDEERFVRE SEAYSNDILP KATGHAERLK KEAQGYSEKT INGALGEVAQ FEKLLPEYEV 300
  301 AKEVTRSRLY LETMERVYSN TSKVMIDSKS NGNLLYLPLD KLMNQSGNTK TKAGTSSSSY 360
  361 GIELEKVESP TPVSTSPRSD TGRQGRY

Type	Start	End	Confidence
Cytoplasmic	1	60	0.75
Transmembrane Helix	61	83	0.75
Non-Cytoplasmic	84	387	0.93