YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54310328, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPLLVLSA LALGISSVIA PVTATAALPV SVNNQQLPSL APMLEKVTPA VVSIAVEGKH  60
   61 TSTQRLPDSF RFFFGPDFPE EQIREQPFRG LGSGVIVDAG KGYIVTNHHV IDGADKIIVQ 120
  121 FYDGRELTAE LIGSDKMSDI ALLQVKAPKD LAEIKIADSD QLRVGDYTVA IGNPFGLGQT 180
  181 VTSGIVSALG RSGLNIENFE NFIQTDAAIN SGNSGGALVN LNGELIGINT AILGPNGGNV 240
  241 GIGFAIPSNM VRNLTEQILE FGEVKRGVLG VQGGELTAEL AEAFGYETNQ GAFVNQVMPD 300
  301 SSAEKAGLKA GDIIVSINGK NIRTFGELRA KIATLGAGKK VTLGIIRDSK AQDFTVTLQE 360
  361 MVQNTVKADN LHPGLVGAEF ANTSSSDNTK GVKVTNVAEK SLAARYGLLK GDIIIGLNRS 420
  421 PIKNLGELRK ALDKNPAVLA LEVQRKDAVL YLIIR

Type	Start	End	Confidence
Signal Peptide	1	26	0.98
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	455	0.99