YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54310321, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLIVMLLA LLPSVVMAAG GNVHLDAANN DLSDKASLQR GAKTFVNYCF GCHATQYQRY  60
   61 ERVATDLDIP LDLMRDNLIF DKNAKVGDLM TNSISKEYAA VSFGAPAPDL TLVARVRGTD 120
  121 WLYTYLRSFY ADPSRPFGVN NVIFPSVGMP HVLEELQGVP TKVYETRLVD GEEVQEYVGI 180
  181 KSNGAGELNA DEYDEVVRDL VNFLEYSAEP MKLERQRLGL WVMGFIVIFF VLTVLLKKEY 240
  241 WRDVH

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	217	0.99
Transmembrane Helix	218	236	0.95
Cytoplasmic	237	245	0.88