YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54310271, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.87
Transmembrane Helix	12	31	0.95
Non-Cytoplasmic	32	52	0.92
Transmembrane Helix	53	75	0.91
Cytoplasmic	76	85	0.87
Transmembrane Helix	86	106	0.93
Non-Cytoplasmic	107	135	0.91
Transmembrane Helix	136	157	0.90
Cytoplasmic	158	190	0.92
Transmembrane Helix	191	209	0.83
Non-Cytoplasmic	210	236	0.79
Transmembrane Helix	237	256	0.93
Cytoplasmic	257	287	0.97
Transmembrane Helix	288	311	0.89
Non-Cytoplasmic	312	330	0.87
Transmembrane Helix	331	352	0.92
Cytoplasmic	353	367	0.89
Transmembrane Helix	368	388	0.92
Non-Cytoplasmic	389	406	0.87
Transmembrane Helix	407	428	0.90
Cytoplasmic	429	465	0.93
Transmembrane Helix	466	483	0.88
Non-Cytoplasmic	484	515	0.84
Transmembrane Helix	516	534	0.97
Cytoplasmic	535	542	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEKHIFWQS SSWVLSLLLV LPILAIFYTA LGDSDEVFSH LISTVMGTYT ANTFWLVLGT  60
   61 SVLALLLGLP SAWIMAMCRL PGEKMLQWAL VLPLAMPGYI VGYIYTNWFD YAGPVQIFLR 120
  121 DVFGWQTIHD YWFPNIRSLG GACIVLALVL YPYIYLLARA AFMEQSVSLL QSARLLRCSP 180
  181 WQSFRHISLP LARPSIAVAL SLVAMETLGD FGTVSYFAVN TLTTAVYDTW LGYSNLNAAA 240
  241 KISSLMLLVI FFLISTERFS RRKQKLFQQQ FEHGDDVRYT LTGAKKWCAI IWCWGLVCMA 300
  301 FAFPLLQLGY YAWHYFAESW TTQFLQYSLN SLSVSIITSV VAVILALIVN FYRRLDGSKY 360
  361 TAVPMRLASL GYAVPGTVLA IGVMIPLTSA DHLVNDFTQA YGFGRPGLIF SGTMFAIVFA 420
  421 FVVRFAAVAI GSVESSLAKI SPSLDMASKT MGYASTAMLR RIHLPLIRRG CLIAGLLVFI 480
  481 ESMKELNAAL LLRPFNFETL ATYVFNFASD EQLEQAALPA ILLVIVGLIP LVMINRSLEQ 540
  541 KH