YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54310147, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.85
Transmembrane Helix	17	38	0.91
Non-Cytoplasmic	39	89	0.83
Transmembrane Helix	90	114	0.82
Cytoplasmic	115	141	0.94
Transmembrane Helix	142	166	0.87
Non-Cytoplasmic	167	177	0.80
Transmembrane Helix	178	197	0.91
Cytoplasmic	198	205	0.81
Transmembrane Helix	206	227	0.92
Non-Cytoplasmic	228	250	0.92
Transmembrane Helix	251	272	0.91
Cytoplasmic	273	288	0.93
Transmembrane Helix	289	313	0.89
Non-Cytoplasmic	314	336	0.91
Transmembrane Helix	337	360	0.91
Cytoplasmic	361	380	0.96
Transmembrane Helix	381	402	0.85
Non-Cytoplasmic	403	409	0.59
Transmembrane Helix	410	431	0.85
Cytoplasmic	432	435	0.92
Transmembrane Helix	436	456	0.93
Non-Cytoplasmic	457	462	0.82
Transmembrane Helix	463	485	0.91
Cytoplasmic	486	508	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGISVIKFPT SQRENKMTWF LLCVAALVGG YFIYGAFIEK IFGINENRQT PAYSKQDGVD  60
   61 YVPMSNKKVY LVQLLNIAGV GPIFGPIMGA LYGPAAMLWI VLGCIFAGAV HDYFSGMLSI 120
  121 RNNGASVPTI TGRYLGNGAK HFMNIFAIVL LLLVGVVFVS APAGMITNLV NEQTGIDMSM 180
  181 TTMVVIIFAY YIIATIVPVD KIIGRFYPLF GALLIFMSVG LITAIAFSSE HTLLGDYEMS 240
  241 QMFTNMNPND LPLWPALFIT IACGAISGFH ATQSPLMARC LQNEKNGRFV FYGAMIGEGI 300
  301 IALIWCALAL SFFGSVEALS EAISTGGPGS VVYNSSIGLL GVFGGIIAFL GVVILPITSG 360
  361 DTAFRSSRLI LAEYFNMDQK ALRNRLLMAL PLFVLGGILT QVDFGIIWRY FGFANQTTAV 420
  421 MMLWTASAYL LRHNKLHWVA TVPAMFMTTV CITFILNNSQ LGFGLSMMTS TITGLVAMLA 480
  481 ITGYVIKKSK GKGETDLANE EDGRLETV