YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAB_PHOPR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.83
Transmembrane Helix	20	39	0.84
Non-Cytoplasmic	40	41	0.50
Transmembrane Helix	42	65	0.55
Cytoplasmic	66	67	0.34
Transmembrane Helix	68	84	0.51
Non-Cytoplasmic	85	89	0.51
Transmembrane Helix	90	115	0.78
Cytoplasmic	116	123	0.53
Transmembrane Helix	124	146	0.67
Non-Cytoplasmic	147	147	0.43
Transmembrane Helix	148	166	0.82
Cytoplasmic	167	203	0.78
Transmembrane Helix	204	223	0.88
Non-Cytoplasmic	224	240	0.74
Transmembrane Helix	241	263	0.82
Cytoplasmic	264	308	0.84
Transmembrane Helix	309	334	0.87
Non-Cytoplasmic	335	352	0.76
Transmembrane Helix	353	376	0.84
Cytoplasmic	377	382	0.57
Transmembrane Helix	383	405	0.65
Non-Cytoplasmic	406	453	0.82
Transmembrane Helix	454	474	0.86
Cytoplasmic	475	480	0.83
Transmembrane Helix	481	503	0.89
Non-Cytoplasmic	504	530	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISLGNAFI KNFLGKAPDW YKITIISFLI INPFVFFLVD PFVAGWLLVV EFIFTLAMAL  60
   61 KCYPLQPGGL LAIEAVAIGM TSPAQVKHEL VANIEVLLLL IFMVAGIYFM KQLLLYIFTK 120
  121 ILIGIRSKVL LSLSFCLMAA FLSAFLDALT VIAVVISVTV GFYSIYHKVA SGQDPSTSHD 180
  181 HTTDTHVREV SRDDLENYRS FLRSLLMHAG IGTALGGVMT MVGEPQNLII ADQAGWLFGE 240
  241 FIIRMSPVTV PVFMCGLLTC TLVEKFQICG YGTLLPENVR RILVDYDDEE RKNRTNIDYA 300
  301 KLTAQALIAV WLIVGLAMHL AAVGLIGLTV IIFATSFTGV TEEHALGKAF EEALPFTALL 360
  361 AVFFSIVAVI IDQHLFTPII SWVLTLNGNA QMTMFYIANG LLSMVSDNVF VGTVYINEVK 420
  421 AALVNGVITR DQFDMLAVAI NTGTNLPSVA TPNGQAAFLF VLTSALAPLI RLSYGRMVYM 480
  481 ALPYTIVLAL VGLAGIEFML LPMTEWFYDM GWLVHNTSEV MSTIAPAAGH