YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46913705, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.67
Transmembrane Helix	10	31	0.84
Non-Cytoplasmic	32	37	0.60
Transmembrane Helix	38	60	0.83
Cytoplasmic	61	70	0.63
Transmembrane Helix	71	90	0.85
Non-Cytoplasmic	91	95	0.71
Transmembrane Helix	96	117	0.89
Cytoplasmic	118	125	0.55
Transmembrane Helix	126	147	0.76
Non-Cytoplasmic	148	160	0.80
Transmembrane Helix	161	181	0.90
Cytoplasmic	182	222	0.91
Transmembrane Helix	223	240	0.89
Non-Cytoplasmic	241	251	0.75
Transmembrane Helix	252	271	0.83
Cytoplasmic	272	283	0.72
Transmembrane Helix	284	305	0.89
Non-Cytoplasmic	306	311	0.78
Transmembrane Helix	312	335	0.90
Cytoplasmic	336	343	0.80
Transmembrane Helix	344	364	0.90
Non-Cytoplasmic	365	379	0.80
Transmembrane Helix	380	403	0.87
Cytoplasmic	404	407	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTTIQINEL ESLLIAIIVL FLGYFINTKV TVLRKYNIPE PIVGGLIVAV IIALIHQQGI  60
   61 DITFKLSIKD TLMQMFFATV GLAASYKLLA KGGSRVFLFL GLATVFIIIQ NAVGVTLSTL 120
  121 LGLDPIIGLI VGSITLSGGH GTGAAWAQSF AADYNLHVLE LSMASATFGL VMGGIIGGPV 180
  181 AQRLINKHKL KSSFGDGEHH HIKHPDLITY SDKEEDRITS KNTIEVLFIL LICVAGAAHV 240
  241 KELVDSFGIS WLRIPDFVYA LFIGVFITNI CETTKVYKIN SETVDALGTI SLSLFLAMAL 300
  301 MSLKLWELLE LALPMLMILT VQTVVLAAFA YFVTFRVMGK TYDAAVIAGG HCGFGMGATP 360
  361 TAVMNMGSLV SRNGPSPQAF MVVPIVGAFF IDIANLIVLQ GYLSFIQ