YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46913478, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.81
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKRIRRWFT LLVTAFMLTF ALSAIASEES SQNINNERLG ESVIQGEMAG FAGADYWRAV  60
   61 KNGQEGTTTS KSPEHGVLIS VPGQTWYILK EKWMSPLGAL AIFGSLAMVA LAYVTIGPLK 120
  121 LSKPKTGRKI KRWSRMDRAL HWSMAFTFLT LAFSGLTLVY GKHFIKPIVP SEIWGWVIYA 180
  181 AKQYHNYIGP IFAILLFTVL IKWWRKSVFN KVDMQWFMKL GGMVGKHKGK HPSAGFSNGG 240
  241 EKAIFWLLIW FGLFIAVSGF VLDFPMFGQT RRDMELSNLV HMFSALILIC GFVFHIYIGL 300
  301 FGMEAALDGM ITGEVDETWA KEHHDLWYDD VKDLPENQPG YDEKLDAESK GKASQDNV

Type	Start	End	Confidence
Signal Peptide	1	26	0.79
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	96	0.98
Transmembrane Helix	97	119	0.92
Cytoplasmic	120	138	0.95
Transmembrane Helix	139	161	0.92
Non-Cytoplasmic	162	183	0.93
Transmembrane Helix	184	204	0.93
Cytoplasmic	205	242	0.96
Transmembrane Helix	243	264	0.90
Non-Cytoplasmic	265	278	0.86
Transmembrane Helix	279	301	0.91
Cytoplasmic	302	358	0.96