YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46913131, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNHCLYVV SESDVVELAE INKIDYIDVL RTTSGYVAAS LDSNILRKLV KDLGFTGRAY  60
   61 EKMVNGKKYV IFKGKPGQRK IFTGTRYLST NAKVVDMIVG QRGIKTSAIQ GARLTIFLTV 120
  121 PLIVLQHVLK DRFLLNDLVA DLSVSLIKIG ISSIVGAIFA TGVGAITTIA AAPVALAIVV 180
  181 GLAASYALDR LDKEYRITEK LAKLLEDKAM KQSMKTAWEV EDKLRWQIAN SQAVGKGIYY 240
  241

Type	Start	End	Confidence
Cytoplasmic	1	110	0.83
Transmembrane Helix	111	129	0.57
Non-Cytoplasmic	130	153	0.43
Transmembrane Helix	154	188	0.77
Cytoplasmic	189	240	0.91