YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54308190, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALWVFEQKK RGLTNTQIDK KSQSMKLAAI ASARGNLIHD FKNFYLLAED LQKGGSILGK  60
   61 YEITKNGAKS YITFKGNHKL RSLIKGTRYL SGNAKILALG IGKAGMKASA KTGVLMTVIY 120
  121 SVPFRTLELA LNKNYLITNW IVNISSDVIK AAISAVFGYT IGAISSSGGV ILVPIFAGIA 180
  181 AAFVMGELLT IFEGRYLVKD RIIDSINNFI ETRTREYIDN RQGVNFSRAA IQQLRTSTHG 240
  241 VNF

Type	Start	End	Confidence
Cytoplasmic	1	139	0.86
Transmembrane Helix	140	163	0.54
Non-Cytoplasmic	164	169	0.51
Transmembrane Helix	170	192	0.82
Cytoplasmic	193	243	0.82