YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46912456, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.67
Transmembrane Helix	69	90	0.76
Non-Cytoplasmic	91	96	0.48
Transmembrane Helix	97	119	0.89
Cytoplasmic	120	125	0.39
Transmembrane Helix	126	141	0.54
Non-Cytoplasmic	142	148	0.53
Transmembrane Helix	149	167	0.94
Cytoplasmic	168	178	0.82
Transmembrane Helix	179	198	0.93
Non-Cytoplasmic	199	213	0.75
Transmembrane Helix	214	236	0.86
Cytoplasmic	237	242	0.81
Transmembrane Helix	243	263	0.92
Non-Cytoplasmic	264	287	0.81
Transmembrane Helix	288	311	0.79
Cytoplasmic	312	330	0.89
Transmembrane Helix	331	351	0.64
Non-Cytoplasmic	352	365	0.51
Transmembrane Helix	366	386	0.89
Cytoplasmic	387	392	0.53
Transmembrane Helix	393	413	0.90
Non-Cytoplasmic	414	423	0.56
Transmembrane Helix	424	449	0.82
Cytoplasmic	450	459	0.60
Transmembrane Helix	460	478	0.81
Non-Cytoplasmic	479	479	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSLFADVLV IFWKLCFEKL IIAPKIGHAN VSYFKNFFEL LRTISKELRA MLEKLFKLKE  60
   61 HGTDVRTELL AGLTTFLTMA YIIFVNPTML SNAGMDHGAV FVATCLAAMV GCFIMGFVAN 120
  121 YPVAQAPGMG LNAFFTYTVV LGMGHTWQVA LAAVFISGLC FIVLSLLKVR EWIINAIPLA 180
  181 LRTGISAGIG LFLAFIALQS SGIVVDNPAT LVHIGDLTSF PAAMAALGFF LTIALVHRGY 240
  241 KAAVLIAIIA VTVLSVLFGE VSYNGIMSMP PSIAPTFLQL DFSGAMEVGL ISIVFAFLFV 300
  301 DLFDTAGTLV GVATKANLID KDGKLPRLNR ALLADSTATS IGALLGTSNT TSFVESVAGV 360
  361 AVGGRTGLTA VTVGVLFLLA LFFAPLAGMV PPYATAGALF YVAILMMSGL VSIDWRDLTE 420
  421 AAPVVVVCLL MPLTYSIAEG IGLGFITYAA VKVMSGKGRD VNISVWVISA LFLAKIIFL