YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54307430, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALFSSPPKS LCILRLSAIG DVCHAIAVVQ AIQQHWPDTD ITWVTGKIET QLIGHLPGIN  60
   61 VVTFDKKAGL KGMQAVWSAL KGQKFDALLH MQAAIRASAL SLGIKAKYRV GFSRNRTKEG 120
  121 QWLFTNKHLP NTNSFHVLDN FADFARYIGV PFTTPSWNIP LTDEDIQFAK HYTANKKTLL 180
  181 ISPAASKDER NWLTERYAEI ADYANQQGMQ VLLCGSPAPR EINLGKSIEQ HCQYPVVNLI 240
  241 GQTNLKQLTA LLGQADVVLA PDTGPAHLAT TQGTPVIGLY AHSNPKRTGP YNSLDIVASV 300
  301 YEQHVEEQQG KPVNDLPWGT RVKGTDLMQD ISVEHVKNIL AGILSTANQR

Type	Start	End	Confidence
Signal Peptide	1	25	0.92
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	350	0.99