YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90412261, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIGFLQALM LGILAFFAGL DLFNGLTHFH RPVVLGPLVG FILGDLQTGI LVGGTLELIW  60
   61 MGLAPLAGAQ PPNVIIGTIV GTTFAISTSV EPNVAVGVAV PFAVAVQMGI TLLFSAMSAV 120
  121 MSKCDEYAQN ADTDGIERVN YFALAVLGTF YFLCAFLPVY LGAEHAGAIV ETLPKELVDG 180
  181 LGVAGGIMPA IGFAVLMKIM MKNVYIPYFI LGFVAAAWLQ LPILAIAAAA TAMAVIDFMR 240
  241 KSEPTPVTAP AEDLEDGI

Type	Start	End	Confidence
Cytoplasmic	1	7	0.57
Transmembrane Helix	8	28	0.89
Non-Cytoplasmic	29	37	0.52
Transmembrane Helix	38	61	0.78
Cytoplasmic	62	68	0.44
Transmembrane Helix	69	90	0.73
Non-Cytoplasmic	91	97	0.55
Transmembrane Helix	98	120	0.87
Cytoplasmic	121	138	0.73
Transmembrane Helix	139	161	0.90
Non-Cytoplasmic	162	176	0.71
Transmembrane Helix	177	199	0.86
Cytoplasmic	200	207	0.60
Transmembrane Helix	208	232	0.86
Non-Cytoplasmic	233	258	0.72