YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46916005, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIGVPKEIF ANETRVAATP KTVEQLLNMG FSVAIEQNAG VLASFGDAAF EAAGATIVST  60
   61 EDVWQSDLIL KVNAPQVNDE TGVDEFDLIK EGASIACFIW PAQNKELLDK LSTKNINVMA 120
  121 MDSVPRISRA QALDALSSMA NIAGYRAVVE AAHEFGRFFT GQITAAGKVP PAKVLVAGAG 180
  181 VAGLAAIGAA GSLGAIVRSF DVRPEVKEQV ESMGASFLEV DFKEDTSTGD GYAKEMSDDF 240
  241 NKAAERLYAE QAKDVDIIIT TALIPGRPAP KLITKEMVDS MKSGSVIVDL AAANGGNCVY 300
  301 TEANKVITTP NGVKVIGYTD MVGRLPTQSS QLYGTNLVNL LKLLCKEKDG NINIDFEDEV 360
  361 LRGLTVIKEG EITWPAPAIK VSAAPQQPAA EIKPKVVVKK APMSPVKKYG LMAAGIAAFG 420
  421 WIANYAPAEF LAHLTVFVLA CVVGYYVVWN VSHALHTPLM SVTNAISGII IVGAVLQVSQ 480
  481 GSSLVTVLAF IAVLIASINI FGGFTVTKRM LEMFRKDK

Type	Start	End	Confidence
Cytoplasmic	1	131	0.64
Transmembrane Helix	132	149	0.42
Non-Cytoplasmic	150	173	0.75
Transmembrane Helix	174	197	0.77
Cytoplasmic	198	404	0.98
Transmembrane Helix	405	423	0.88
Non-Cytoplasmic	424	429	0.76
Transmembrane Helix	430	449	0.95
Cytoplasmic	450	458	0.76
Transmembrane Helix	459	478	0.93
Non-Cytoplasmic	479	484	0.79
Transmembrane Helix	485	506	0.94
Cytoplasmic	507	518	0.93