YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46915426, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	44	0.92
Non-Cytoplasmic	45	55	0.79
Transmembrane Helix	56	77	0.86
Cytoplasmic	78	90	0.68
Transmembrane Helix	91	111	0.93
Non-Cytoplasmic	112	141	0.88
Transmembrane Helix	142	161	0.95
Cytoplasmic	162	170	0.80
Transmembrane Helix	171	191	0.90
Non-Cytoplasmic	192	202	0.83
Transmembrane Helix	203	225	0.89
Cytoplasmic	226	238	0.85
Transmembrane Helix	239	258	0.94
Non-Cytoplasmic	259	311	0.87
Transmembrane Helix	312	339	0.80
Cytoplasmic	340	359	0.88
Transmembrane Helix	360	380	0.94
Non-Cytoplasmic	381	415	0.67
Transmembrane Helix	416	437	0.94
Cytoplasmic	438	454	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLWHPSITP VERKPKAAKK IIGAPPFILC GSFILLVIIG ACLLKLPIAT EVPISWLQSL  60
   61 FTATSAVTVT GLVVVDTSTT FTPFGQVIIN VLIQFGGLGL MTFAIVTLIA LGGKISFLQQ 120
  121 TVAREAFNQT DTSTLVSTAK SVLVFSLAIE LIGILILSVY WSGELGWKAS LFHGFFYTIS 180
  181 AFNNAGFALS ADSLMPYVED PVVNFTITGL FIIGGLGFSV LIDLLRNKCW SKLTPYSKMM 240
  241 ITGTVLINAV ALIAIYCIEY NNPNTLAPLS NMGKWLASWF QAVTTRTAGF NTLAIDQLED 300
  301 ATTMVILMLM FIGGGSLSTA SGIKVVTFMV LILATYRYLR RDEGIHIFQR EITKETVSKA 360
  361 LALTMISIGI TWIAIFALLL SEDAPILDII FEAVSALGTV GLSRGLTTSL SETGEFIIIF 420
  421 MMFIGRLGPL TLAYFLASPR TKRLRYPETK VTIG