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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46915107, gi|...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSIKRVTQK NKPQNKQKSC VAGGYWLNVI GYSVVTLAAI AFSHTIFAKD PQSADSAFNQ  60
   61 KIDVGILATR GNLEALNRWQ PTMDWLERKI PNTEFVLYPY TLEQMTEAVK AQTVDFVITN 120
  121 PGQSVLLGRQ YPLSWLATLR SQQQGGTTLA IGSALVVRND SSYFTLTDLD NQPVAAVSDS 180
  181 AFGGYLTLRR KMQQRSLDPN RFFSTVDFIG FPLDAILYKL RDKHVEAAVL PVCQLETMGR 240
  241 EGLIDFSQYR VLDNQAPVGF GCQVSTALYP NWSFAKTGKA SETLAKQIAR ALLDLPERDP 300
  301 AAIAAHSLGW SAPISQLKID KLYQDLDLHP LQKPWWQEAF TWLKSNQQWG WTFLLFVVVL 360
  361 NLYHFLLEYR FSRNQRLLIA TQNRLKEKNA MLEHAQRVAI VGELGGSIAH EINQPLSAIR 420
  421 NYSQGGLVRI NKGSSADDLK VVLEKIQQQV IRADDIVQRL RSLIKKRPIN KQYSNVQALI 480
  481 TDAVMLLDHD LIKHQITLSM TESGQVVPVY LDPIGFQQLL LNLVKNAMDA CVLDHQKQRV 540
  541 QELHTQEKYQ IVIHTEYLPV EKQMKLVVTD NGNGIGLEAD TALLQSAFFT TKEEGLGLGL 600
  601 AICRDVVEDH HGTLTMASNS PHGCRIEVRL PYIGNTEN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle