YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60683750, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLSNSSVGR KVVMSVTGIA LVLFLTFHMA MNLVAIISAE GYNLVCEFLG ANWYALVATL  60
   61 GLAALFVIHI IYAFWLTIQN RAARGSERYA VVDKPKTVEW ASQNMLVLGI IVILGLGLHL 120
  121 FNFWAKMQLP ELVHNMGGVA DTTYAADGVY HIMNTFSNPV YVVLYLVWLG ALWFHLTHGF 180
  181 WSSMQSLGWN NKIWINRWKC ISNIYSTIVV VCFALVVVVF FVKSLACGAC

Type	Start	End	Confidence
Cytoplasmic	1	11	0.94
Transmembrane Helix	12	36	0.84
Non-Cytoplasmic	37	53	0.88
Transmembrane Helix	54	76	0.93
Cytoplasmic	77	103	0.88
Transmembrane Helix	104	123	0.92
Non-Cytoplasmic	124	160	0.91
Transmembrane Helix	161	181	0.92
Cytoplasmic	182	200	0.89
Transmembrane Helix	201	222	0.93
Non-Cytoplasmic	223	230	0.77