YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53987537, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	289	0.50
Transmembrane Helix	290	309	0.92
Non-Cytoplasmic	310	315	0.37
Transmembrane Helix	316	337	0.71
Cytoplasmic	338	338	0.34
Transmembrane Helix	339	359	0.69
Non-Cytoplasmic	360	364	0.70
Transmembrane Helix	365	388	0.90
Cytoplasmic	389	396	0.79
Transmembrane Helix	397	415	0.94
Non-Cytoplasmic	416	435	0.85
Transmembrane Helix	436	457	0.92
Cytoplasmic	458	486	0.94
Transmembrane Helix	487	508	0.92
Non-Cytoplasmic	509	518	0.78
Transmembrane Helix	519	538	0.72
Cytoplasmic	539	544	0.63
Transmembrane Helix	545	564	0.85
Non-Cytoplasmic	565	569	0.66
Transmembrane Helix	570	589	0.65
Cytoplasmic	590	604	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKVCSKLKK EHHFEFVDSL DFFSREAKIA EIRSYYKKRI EFNQEKLDTA IYAWHDDFFN  60
   61 LKVSTDDRKD FIEKKAQKQI RLAQKALENL ENQYLNLALD QASFESQKIH LQKQIDQQIK 120
  121 EIKTKAEAKK RKANEFLEKQ RVKYEKEIAK KEALHKNFMD YIHQDSKNQI NKISKQFQQI 180
  181 VETDPSFFSS RQEKLAQDLR VLNRHTKAKL ETLESDFSLR KIGKNTFLDQ KKNIELSYLK 240
  241 EVKMLQKQAQ MVHPKMRMAT KIWNFLKFRE QDRFINNVER AKKSLNNTKL LILFLIIAFI 300
  301 TGALNVNFFS SYNWFVAILK NNIFIGFIAL GQTLVILTGG IDLSVGSLIG FGATIYLLLT 360
  361 VKLGLHFVAV LFILIIILAA IGILNGILIS KFKIPPFIVT LAGLLSLRGA IAILLKGTPI 420
  421 TNAQDPIFNF FNYNLGSNFS VLVLVFIITV AVLIFFIKFS KFGRYVYAVG DNPVAATFSG 480
  481 IKNNKILILV YMFSGIFAIL GALSISSGTT SVSPNTGYGF ELDTVTAVVL GGTALTGGKG 540
  541 GVGKTIIGWF AMALLLNTFS FFQLDSNFQL VAKGIIIVLA ILFDQKYHIN ERLSKLYYKV 600
  601 LVKI