YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46237481
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGPLPKRLL LWFIGLLGIA LLALIVVCVA MQIQVPWQVL TLQSFTINHY RLFPVKNNNS  60
   61 SPGFQLSTAN EVETNEVLEQ NSVQQSDVQD SSANLINNAK SDQLNPNANF IKPVPKTEAK 120
  121 PFIPDFFGDQ YATDDVPLQT NCPTSIMKLL PQSPFAEKFL HSIPVLQWAK HFTTEEYQRL 180
  181 SHYAGAHGWG SVDVEVLKSS LRILNTTANH LMFDDWESRT NKSECIRCAV VGNGGILNGS 240
  241 RKGTEIDAHD YVFRVNGAAL NGFEKDVGSR TSFYTFSTNT MRNSMRSYAG VGYSGPPISK 300
  301 ETRYIFLPDH DRDYILMKAA STHTIIEKGP ERSNKPPKYF GEDVTVEKFK IYHPDFIRYL 360
  361 RNRFLRSNLL NTGAKKIYRP STGAVMLLAA IHTCDQVDAY GFMTPDYNLY SDHYYDKVRH 420
  421 PVHFYANHDM RMEMKLWQKL HEAGLMKLFM RT

Type	Start	End	Confidence
Cytoplasmic	1	8	0.54
Transmembrane Helix	9	31	0.51
Non-Cytoplasmic	32	452	0.99