YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51893889, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.91
Transmembrane Helix	16	35	0.94
Non-Cytoplasmic	36	69	0.94
Transmembrane Helix	70	96	0.86
Cytoplasmic	97	108	0.83
Transmembrane Helix	109	128	0.93
Non-Cytoplasmic	129	151	0.89
Transmembrane Helix	152	172	0.68
Cytoplasmic	173	203	0.76
Transmembrane Helix	204	226	0.89
Non-Cytoplasmic	227	254	0.87
Transmembrane Helix	255	277	0.89
Cytoplasmic	278	303	0.95
Transmembrane Helix	304	327	0.90
Non-Cytoplasmic	328	365	0.96
Transmembrane Helix	366	387	0.94
Cytoplasmic	388	396	0.89
Transmembrane Helix	397	420	0.89
Non-Cytoplasmic	421	426	0.85
Transmembrane Helix	427	448	0.90
Cytoplasmic	449	488	0.94
Transmembrane Helix	489	511	0.83
Non-Cytoplasmic	512	537	0.85
Transmembrane Helix	538	557	0.95
Cytoplasmic	558	567	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKWNDRWQ RITASPYFVY VIVAPLALVL WGYVVQPMLA TFLASVQDSS GFTLKYYRGF  60
   61 FSLNSTQMEA LLTTVGISVL SVITCAVVGV SMAVLLNRFE FPGRRLLESL ILVPMALPPL 120
  121 IGIYAFQFLY SSSGIIPRAL KVLFDLPQVP FALKGLTGVL VVHTFTMYPY FYTSAAAALA 180
  181 GFDPSLEEAA YNLGARRWQV WTRVLLPMLT PALVAGSLLT FMVSMASYTA PLIFGVDRIM 240
  241 TMQIAIARTN GDLALASAEA TVLSVVSIAF LVLMRWYQNR RTYRSLSKGV SVHRTEVKSP 300
  301 VGKILAMVAS IFGTLILILP VLVLVLVSFS KDGSWTVQVL PPKYTLDNYI TLFTSSRAWR 360
  361 PIRNSLAMSA LATVGSILLG VAAAYALNRF KFKGKSLLDV AVMIPWALPG TVVAINLIAA 420
  421 FNQPSVFTFG KVIVGTFWIL PLAYFVRFSP LVFRSTNATL AQLDPSVEEA ARSLGATWWY 480
  481 SFRRVTFPLM FRGVLAGALM AFVQGVGEFV ASVLIYTARN QPISVEINNL MYSFKFGTAA 540
  541 AYGLLQMLLI LVAIYISNRL EQRQNLA